Biosynthetic potential of endophytic fungi associated with breadfruit (Artocarpus communis forst.) for antimicrobial agent production
DOI:
https://doi.org/10.35814/jifi.v24i2.2101Kata Kunci:
Antimicrobial activity, Artocarpus communis forst, endophytic fungi, liquid fermentation, secondary metabolitesAbstrak
The rising incidence of antibiotic resistance in pathogenic bacteria necessitates the exploration of endophytic fungi as alternative sources of novel antimicrobial compounds. This study aimed to isolate, characterize, and evaluate the antimicrobial potential of endophytic fungi derived from the leaves and stems of breadfruit (Artocarpus communis Forst) against Staphylococcus aureus, Escherichia coli, and Candida albicans. Isolation was conducted using surface sterilization and direct plating methods on Potato Dextrose Agar (PDA). Fungal isolates were characterized macroscopically and microscopically. Antimicrobial potential was assessed in two stages: preliminary screening using the dual culture antagonism method, followed by confirmation testing of secondary metabolites produced via liquid fermentation in Potato Dextrose Broth (PDB) using the agar well diffusion method. Eight pure isolates were successfully obtained: three from leaves and five from stems. Preliminary screening indicated that stem-derived isolates exhibited superior antimicrobial activity compared to leaf-derived isolates. Secondary metabolite screening revealed that isolate B1a-Ir effectively inhibited S. aureus with an inhibition zone of 9.19 ± 0.17 mm, surpassing the positive control (chloramphenicol). Furthermore, isolates B2a-Ir and B3b-Ir exhibited strong antifungal activity against C. albicans with inhibition zones of 13.09 ± 0.49 mm and 13.93 ± 0.17 mm, respectively, surpassing the positive control (ketoconazole). This study highlights that endophytic fungi from breadfruit stems are promising sources of bioactive compounds for future antimicrobial therapy development, particularly against S. aureus and C. albicans.
Referensi
[1] World Health Organization, “Antimicrobial resistance,” World Health Organization, Nov. 21, 2023. [Online]. Available: https://www.who.int/news-room/fact-sheets/detail/antimicrobial-resistance. [Accessed: Sep. 09, 2026].
[2] S. M. Bhavnani, K. M. Krause, and P. G. Ambrose, "A broken antibiotic market: Review of strategies to incentivize drug development," Open Forum Infectious Diseases, vol. 7, no. 7, p. ofaa083, 2020. https://doi.org/10.1093/ofid/ofaa083.
[3] R. Prestinaci, P. Pezzotti, and A. Pantosti, "Antimicrobial resistance: a global multifaceted phenomenon," Pathogens and Global Health, vol. 109, no. 7, pp. 309-318, 2015. https://doi.org/10.1179/2047773215Y.0000000030.
[4] A. G. Atanasov et al., "Natural products in drug discovery: Advances and opportunities," Nature Reviews Drug Discovery, vol. 20, pp. 200–216, 2021. https://doi.org/10.1038/s41573-020-00114-z.
[5] P. Tiwari and H. Bae, "Endophytic fungi: Key insights, emerging prospects, and challenges in natural product drug discovery," Microorganisms, vol. 10, no. 2, p. 360, 2022. https://doi.org/10.3390/microorganisms10020360.
[6] S. Gouda, G. Das, S. K. Sen, and H. S. Shin, "Endophytes: A treasure house of bioactive compounds of medicinal importance," Frontiers in Microbiology, vol. 7, p. 1538, 2016. https://doi.org/10.3389/fmicb.2016.01538.
[7] J. B. A. dos Reis, A. Sturion Lorenzi, and H. M. M. do Vale, “Methods used for the study of endophytic fungi: a review on methodologies and challenges, and associated tips,” Archives of Microbiology, vol. 204, no. 11, p. 675, 2022. https://doi.org/10.1007/s00203-022-03283-0.
[8] ] M. M. Gakuubi, M. Munusamy, Z. X. Liang, and S. B. Ng, "Fungal endophytes: A promising frontier for discovery of novel bioactive compounds," Journal of Fungi, vol. 7, no. 10, p. 834, 2021. https://doi.org/10.3390/jof7100786.
[9] H. Chandra et al., "Fungal endophytes from medicinal plants acting as natural therapeutic reservoir," Current Research in Microbial Sciences, vol. 3, p. 100073, 2024. https://doi.org/10.1016/j.microb.2024.100073.
[10] R. F. Zakariyah et al., "Progress in endophytic fungi secondary metabolites: Biosynthetic gene cluster reactivation and advances in metabolomics," Bulletin of the National Research Centre, vol. 48, no. 1, p. 18, 2024. https://doi.org/10.1186/s42269-024-01199-x.
[11] M. M. Gakuubi et al., "Enhancing the discovery of bioactive secondary metabolites from fungal endophytes using chemical elicitation and variation of fermentation media," Frontiers in Microbiology, vol. 13, p. 898976, 2022. https://doi.org/10.3389/fmicb.2022.898976.
[12] U. B. Jagtap and V. A. Bapat, "Artocarpus: A review of its traditional uses, phytochemistry and pharmacology," Journal of Ethnopharmacology, vol. 129, no. 2, pp. 142-166, 2010. https://doi.org/10.1016/j.jep.2010.03.031.
[13] F. Rahmawati, H. Silaban, and C. Z. Azriza, "Bioactivity of breadfruit leaf extract (Artocarpus altilis)," International Journal of Applied Sciences and Biotechnology, vol. 8, no. 3, pp. 361-366, 2020. https://doi.org/10.37287/ijghr.v7i6.513.
[14] L. M. Brigham et al., "Drivers of bacterial and fungal root endophyte communities: Understanding the relative influence of host plant, environment, and space," FEMS Microbiology Ecology, vol. 99, no. 5, p. fiad034, 2023. https://doi.org/10.1093/femsec/fiad034.
[15] S. Maehara, A. Agusta, C. Kitamura, K. Ohashi, and H. Shibuya, "Composition of the endophytic filamentous fungi associated with Cinchona Ledgeriana seeds and production of Cinchona alkaloids," Journal of Natural Medicines, vol. 70, no. 2, pp. 271-275, 2016. https://doi.org/10.1007/s11418-015-0954-0.
[16] ] L. V. Hoyos et al., "Tailored culture strategies to promote antimicrobial secondary metabolite production in Diaporthe caliensis: A metabolomic approach," Journal of Fungi, vol. 10, no. 1, p. 41, 2024. https://doi.org/10.1186/s12934-024-02567-y.
[17] C. You et al., "Plant triterpenoids regulate endophyte community to promote medicinal plant Schisandra sphenanthera growth and metabolites accumulation," Frontiers in Plant Science, vol. 12, p. 687799, 2021. https://doi.org/10.3390/jof7100788.
[18] A. Rianto, M. Isrul, S. Anggarini, and A. Saleh, "Isolation and identification of endophytic fungi from cashew leaves (Anacardium occidentale L.) as antibacterial against Salmonella typhimurium," Mandala Pharmacon Indonesia Journal, vol. 4, no. 2, pp. 109-121, 2018. https://doi.org/10.35311/jmpi.v4i02.34.
[19] V. V. Hasiani, I. Ahmad, and L. Rijai, "Isolation of endophytic fungi and production of antioxidant secondary metabolites from henna leaves (Lawsonia inermis L.)," Journal of Science and Health, vol. 1, no. 4, pp. 146-153, 2015. https://doi.org/10.30872/jsk.v1i4.41.
[20] P. K. Sahu, J. Tilgam, S. Mishra, S. Hamid, A. Gupta, et al., “Surface sterilization for isolation of endophytes: Ensuring what (not) to grow,” Journal of Basic Microbiology, vol. 62, no. 6, pp. 647–668, 2022. https://doi.org/10.1002/jobm.202100462.
[21] M. Jamilatun and Shufiyani, "Isolation and identification of endophytic molds from cogon grass (Imperata cylindrica (L.) BEAUV.)," Medikes Journal (Health Information Media), vol. 6, no. 1, pp. 27-36, 2019. https://doi.org/10.36743/medikes.v6i1.92.
[22] I. M. Abna, B. Sylvia, and M. Amir, “Isolation and antimicrobial analysis of endophytic fungi from jackfruit (Artocarpus heterophyllus Lam.),” Jurnal Katalisator, vol. 6, no. 2, pp. 146–163, 2021.
[23] M. R. Efendi, M. S. Rusdi, and F. Anisa, "Isolation and antibacterial activity test of the extract ethyl acetate of endophytic fungi from kencur (Kaempferia Galanga L.)," Journal of Pharmaceutical and Sciences, vol. 3, no. 2, pp. 85-92, 2020. https://doi.org/10.36490/journal-jps.com.v3i2.42.
[24] R. W. S. Weber, R. Kappe, T. Paululat, E. Mösker, and H. Anke, “Anti-Candida metabolites from endophytic fungi,” Phytochemistry, vol. 68, no. 6, pp. 886–892, 2007. https://doi.org/10.1016/j.phytochem.2006.12.017.
[25] M. Balouiri, M. Sadiki, and S. K. Ibnsouda, "Methods for in vitro evaluating antimicrobial activity: A review," Journal of Pharmaceutical Analysis, vol. 6, no. 2, pp. 71-79, 2016. https://doi.org/10.1016/j.jpha.2015.11.005.
[26] P. Igbinaduwa, O. E. Abayomi, and H. O. Uwumarongie, "Chemical composition and anti-microbial evaluation of various fractions of the methanol seed extract of Carica papaya L (Caricaceae)," European Journal of Physical and Agricultural Sciences, vol. 6, no. 1, pp. 28–37, 2018.
[27] C. A. G. P. et al., “Anthracycline Shunt Metabolites From Philippine Marine Sediment-Derived Streptomyces Destroy Cell Membrane Integrity of Multidrug-Resistant Staphylococcus aureus,” Frontiers in Microbiology, vol. 11, p. 743, 2020. https://doi.org/10.3389/fmicb.2020.00743.
[28] S. Bahri, P. Amelia, A. Hardini, F. Ramadhan, and A. A. Muhammad, "Antibacterial activity of endophytic fungi from the bark of Java wood (Lannea coromandelica (Hout.) Merr.) against Streptococcus mutans and Shigella dysenteriae bacteria," Jurnal Biotek Medisiana Indonesia, vol. 10, no. 1, pp. 41-48, 2021. https://doi.org/10.15408/kauniyah.v15i1.17973.
[29] S. Chatterjee, R. Ghosh, and N. C. Mandal, “Inhibition of biofilm- and hyphal-development, two virulent features of Candida albicans by secondary metabolites of an endophytic fungus Alternaria tenuissima having broad spectrum antifungal potential,” Microbiological Research, vol. 232, p. 126386, 2020. https://doi.org/10.1016/j.micres.2019.126386.
[30] S. Pradhan, S. Dash, S. Parida, B. Sahoo, and B. Rath, “Antioxidant and antimicrobial activities and GC/MS-based phytochemical analysis of two traditional Lichen species Trypethellium virens and Phaeographis dendritica,” Journal of Genetic Engineering and Biotechnology, vol. 21, 2023. https://doi.org/10.1186/s43141-023-00490-0.
[31] S. M. Astari, A. Rialita, and M. Mahyarudin, "Antibacterial activity of endophytic bacterial isolates from turmeric plant (Curcuma longa L.) against the growth of Staphylococcus aureus," Jurnal Fitofarmaka Indonesia, vol. 8, no. 2, pp. 9-16, 2021. https://doi.org/10.33096/jffi.v8i2.644.
[32] A. Bouyahya et al., “Essential oils of Origanum compactum increase membrane permeability, disturb cell membrane integrity, and suppress quorum-sensing phenotype in bacteria,” Journal of Pharmaceutical Analysis, vol. 9, no. 5, pp. 301–311, 2019. https://doi.org/10.1016/j.jpha.2019.03.001.
[33] P. R. Hardoim et al., "The hidden world within plants: ecological and evolutionary considerations for defining functioning of microbial endophytes," Microbiology and Molecular Biology Reviews, vol. 79, no. 3, pp. 293-320, 2015. https://doi.org/10.1128/MMBR.00050-14.
[34] O. A. Aleynova and K. V. Kiselev, "Interaction of plants and endophytic microorganisms: Molecular aspects, biological functions, community composition, and practical applications," Plants, vol. 12, no. 4, p. 856, 2023. https://doi.org/10.3390/plants12040714.
[35] N. Christian, "Host affinity of endophytic fungi and the potential for reciprocal interactions involving host secondary chemistry," American Journal of Botany, vol. 107, no. 2, pp. 1-10, 2020. https://doi.org/10.1002/ajb2.1436.
[36] J. Brendon, R. Adriana, S. Lorenzi, and H. Mario, "Methods used for the study of endophytic fungi: A review on methodologies and challenges, and associated tips," Archives of Microbiology, vol. 204, no. 11, p. 675, 2022. https://doi.org/10.1007/s00203-022-03283-0.
[37] A. H. Delcour, “Outer membrane permeability and antibiotic resistance,” Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, vol. 1794, no. 5, pp. 808–816, 2009. https://doi.org/10.1016/j.bbapap.2008.11.005.
[38] G. A. Strobel and B. Daisy, "Bioprospecting for microbial endophytes and their natural products," Microbiology and Molecular Biology Reviews, vol. 67, no. 4, pp. 491-502, 2003. https://doi.org/10.1128/MMBR.67.4.491-502.2003.
[39] N. Rutkowska, P. Drożdżyński, M. Ryngajłło, and O. Marchut-Mikołajczyk, "Plants as the extended phenotype of endophytes, The actual source of bioactive compounds," International Journal of Molecular Sciences, vol. 24, no. 12, p. 10096, 2023. https://doi.org/10.3390/ijms241210096.
[40] H. Castillo-González and J. C. Slot, "Exploring Rubiaceae fungal endophytes across contrasting tropical forests, tree tissues, and developmental stages," Peer Community Journal, vol. 5, article no. e26, 2025. https://doi.org/10.24072/pcjournal.526.
[41] N. Petrosillo and G. Granata, "Gram negatives and antimicrobial resistance: Two faces of the same coin," Journal of Clinical Medicine, vol. 11, no. 19, p. 5574, 2022. https://doi.org/10.3390/jcm11195574.
[42] H. Nikaido, "Molecular basis of bacterial outer membrane permeability revisited," Microbiology and Molecular Biology Reviews, vol. 67, no. 4, pp. 593-656, 2003. https://doi.org/10.1128/MMBR.67.4.593-656.2003.
[43] R. Riga, N. Happyana, and E. H. Hakim, “Secondary metabolites from Colletotrichum gloeosporioides isolated from Artocarpus heterophyllus and evaluation of their cytotoxic and antibacterial activities,” Natural Product Research, vol. 38, no. 22, pp. 3950–3956, 2024. https://doi.org/10.1080/14786419.2023.2269596.
[44] B. Tudzynski, "Nitrogen regulation of fungal secondary metabolism in fungi," Frontiers in Microbiology, vol. 5, p. 656, 2014. https://doi.org/10.3389/fmicb.2014.00656.
[45] O. Calvo-gomez, F. Eshboev, and K. Mullaiarova, "Endophytic bioactive compounds for wound healing: A review of biological activities and therapeutic potential," Applied Biochemistry and Biotechnology, 2025. https://doi.org/10.3390/microorganisms13071691.
[46] N. Kaur and D. S. Arora, “Prospecting the antimicrobial and antibiofilm potential of Chaetomium globosum an endophytic fungus from Moringa oleifera,” AMB Express, vol. 10, art. no. 206, 2020. https://doi.org/10.1186/s13568-020-01143-y.
[47] J. Zheng et al., "Genome mining and OSMAC strategies unveil diverse secondary metabolites from the endophytic fungus Diaporthe kyushuensis ZMU-48-1 with antifungal activity," Frontiers in Microbiology, vol. 16, no. 4, p. 639, 2025. https://doi.org/10.3389/fmicb.2025.1604639.
[48] S. Rajendran et al., "Antibacterial eremophilane sesquiterpenoids from Xylaria feejeensis, an endophytic fungi of the medicinal plant Geophila repens," Fitoterapia, vol. 167, p. 105496, 2023. https://doi.org/10.1016/j.fitote.2023.105496.
[49] A. Zakiyah, N. Radiastuti, and L. O. Sumarlin, "Antibacterial activity of endophytic fungi from quinine plant (Cinchona calisaya Wedd.)," Kauniyah: Jurnal Biologi, vol. 8, no. 2, pp. 51-58, 2015. https://doi.org/10.15408/kauniyah.v8i2.2690.
Unduhan
Diterbitkan
Terbitan
Bagian
Lisensi
Hak Cipta (c) 2026 JURNAL ILMU KEFARMASIAN INDONESIA

Artikel ini berlisensiCreative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Licencing
All articles in Jurnal Ilmu Kefarmasian Indonesia are an open-access article, distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License which permits unrestricted non-commercial used, distribution and reproduction in any medium.
This licence applies to Author(s) and Public Reader means that the users mays :
- SHARE:
copy and redistribute the article in any medium or format - ADAPT:
remix, transform, and build upon the article (eg.: to produce a new research work and, possibly, a new publication) - ALIKE:
If you remix, transform, or build upon the article, you must distribute your contributions under the same license as the original. - NO ADDITIONAL RESTRICTIONS:
You may not apply legal terms or technological measures that legally restrict others from doing anything the license permits.
It does however mean that when you use it you must:
- ATTRIBUTION: You must give appropriate credit to both the Author(s) and the journal, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
You may not:
- NONCOMMERCIAL: You may not use the article for commercial purposes.
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.












